Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDAVKVIAEELKGYIERIEKLEQEKKNVQDQIHDVYAKAADKGWNIKVMKQIIRLRKMEDGDRAEQEILLNTYKRALGMSCEEN
3WDM Chain:A ((109-176))
--ERVRTIAEELRKYDPEIEILGINPTKRIPGLEHERGKVDENG----IWKADVVLVPLEDGDRTEALVRMGKFVVTVDLNPLSR
General information:
TITO was launched using:
RESULT:
Template:
3WDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 25948 for 373 contacts (69.6/contact) +
2D Compatibility (PS) -6896 + (NN) 289 + (LL) 380
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: 15521.0 ( 41.61 by residue)
QMean score : 0.055
(partial model without unconserved sides chains):
PDB file :
Tito_3WDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WDM-query.scw
PDB file :
Tito_Scwrl_3WDM.pdb
: