Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHLIVGLGNPGSQYELTYHNIGFIIVDAICKHWNFQ-SFSKKADCLITSSVINDNKIMLMKPYSFMNNSGIPVARIRNFYKFSLDNVIVIHDDADLEPGRIKIKKGGGSAGHNGLKSIDSSIGN-DYWRLRFGIGRSDSQRSLADYVLSKFSNLD--DVIPLVERIAQNIHLMLQGNNIAFTNSIV
3TD6 Chain:A ((6-178))
--LVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPA-----
General information:
TITO was launched using:
RESULT:
Template:
3TD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122905 for 1378 contacts (-89.2/contact) +
2D Compatibility (PS) -18100 + (NN) -3084 + (LL) 268
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -157421.0 ( -114.24 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_3TD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TD6-query.scw
PDB file :
Tito_Scwrl_3TD6.pdb
: