Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDKKDNAKANSGKIMYPNFFEIDFIINEKEIDCNVTRMLIEKAKKGHKFGETWEDYYRSISDNKRISIYKNV
1KAF Chain:A ((187-196))
------------NGNVYLDIKR---------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 0 for 17 contacts (0.0/contact) +
2D Compatibility (PS) -1111 + (NN) -575 + (LL) 4060
1D Compatibility (HY) -400 + (ID) 50
Total energy: 1924.0 ( 113.18 by residue)
QMean score : -0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1KAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAF-query.scw
PDB file :
Tito_Scwrl_1KAF.pdb
: