Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISSPRINVMLDSVRSASKQLMRDFNELQISNVKSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEAKE---KDYTWFIMPIEGRENFSSRMVYFAVSVCLVHKNKVVAAVVNTPALRETFWAEEKKGAFL----------EDFRSRHIKMRMKSHEG--SLIDVSGNLLNKLLPGNSNIRSVGSTVLGFTYLAAGRYSGIVYSGVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
1IMC Chain:A ((41-240))
-------------------------------------DLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLLVTELGSSRTPETVRMVLSNMEKLFCIPVHGIRSVGTAAVNMCLVATGGADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDLMSRRV
General information:
TITO was launched using:
RESULT:
Template:
1IMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88730 for 1445 contacts (-61.4/contact) +
2D Compatibility (PS) -19829 + (NN) -5614 + (LL) 2776
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -123947.0 ( -85.78 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1IMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IMC-query.scw
PDB file :
Tito_Scwrl_1IMC.pdb
: