Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNKYYDSNNIFAQILRGELPCKKVYEDEDVLAFYDKYPDAPVHILVVPK---SQYISYDDFIFKASAEEIVGFFKTVREITYKYNLEKTGYRLVTNCGENGEQVVPHFHMHILGGKRLGKHVNL
5RHN Chain:A ((4-110))
-------GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAED-----ADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG-
General information:
TITO was launched using:
RESULT:
Template:
5RHN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64143 for 718 contacts (-89.3/contact) +
2D Compatibility (PS) -11479 + (NN) -8302 + (LL) 776
1D Compatibility (HY) -6000 + (ID) 2150
Total energy: -91298.0 ( -127.16 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_5RHN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5RHN-query.scw
PDB file :
Tito_Scwrl_5RHN.pdb
: