Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKALNVCYIG---SKIKLLIETCANNRENTTQLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGPKLINRIITELSGKVSKLETNNNNFYPINEDAVSALINLGYEKTKVYDTIKKYKPNLDTKDIIRTALKELSNYEIDIMQ
1D8L Chain:A ((1-140))
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPM----TCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGL--HGDLF------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1D8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108380 for 964 contacts (-112.4/contact) +
2D Compatibility (PS) -14944 + (NN) -5802 + (LL) 4336
1D Compatibility (HY) -9600 + (ID) 2200
Total energy: -136590.0 ( -141.69 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1D8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D8L-query.scw
PDB file :
Tito_Scwrl_1D8L.pdb
: