Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKELYRDSIVKSLKDKFNYGNIMQVPKLVKVCINMGVGGAATDNKAINEPFDDLYLIAGQKPVSTFAKKSISGFKIRKGATVGCKVTLRRDKMYEFLERLIYVALPREKDFRGFSVKQFDGNGNFSFGIKEHISFLEIDYDKISKIRGMDINIVTSAASDKEAKELLLAFKFPFFD
3J5S Chain:G ((3-176))
-LHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK
General information:
TITO was launched using:
RESULT:
Template:
3J5S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86625 for 1208 contacts (-71.7/contact) +
2D Compatibility (PS) -18449 + (NN) -4583 + (LL) 208
1D Compatibility (HY) -17600 + (ID) 4700
Total energy: -131749.0 ( -109.06 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_3J5S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J5S-query.scw
PDB file :
Tito_Scwrl_3J5S.pdb
: