Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSAWKPPFCHPSVLRLVNRALKQGSINKVIKIHSRASVILPNCLGLKFAVYNGKDYIPVSVNDQNMIGHKFGEFSPTRKFAGHNGDKKAVRR
1IBM Chain:S ((2-88))
-PRSLKKGVFVDDHLLEKVLELNAKGE-KRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITE-NMVGHKLGEFAPTRTYRGHGKEAK----
General information:
TITO was launched using:
RESULT:
Template:
1IBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55775 for 523 contacts (-106.6/contact) +
2D Compatibility (PS) -9775 + (NN) -5425 + (LL) 1068
1D Compatibility (HY) -6000 + (ID) 1850
Total energy: -77757.0 ( -148.67 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_1IBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IBM-query.scw
PDB file :
Tito_Scwrl_1IBM.pdb
: