Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDHSTSYGLITNIRPSPSWLSKLSFWRKKTLLISQFRTSVALYVNENNHILNAIKGSSLSKILDRVNIRDKDGLSALHLTVKGGNVNIVKLLLDGGAEPNIRSWMNLTTPLHNAVLNNRVYIVKLLFDSHANSNILSRSDISPLYFAVVNN
4HQD Chain:A ((30-111))
------------------------------------------------------------------VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG
General information:
TITO was launched using:
RESULT:
Template:
4HQD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33313 for 643 contacts (-51.8/contact) +
2D Compatibility (PS) -8833 + (NN) -5800 + (LL) 4536
1D Compatibility (HY) 0 + (ID) 1600
Total energy: -45010.0 ( -70.00 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_4HQD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HQD-query.scw
PDB file :
Tito_Scwrl_4HQD.pdb
: