Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVALKFIAIGLSVLGILGAGLGVANIFSTMLSGLARNPESEGKMKIYVYVGAGMVEFTGLLAFVLAMLLMFVA
5BPS Chain:A ((4-74))
--VLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF--
General information:
TITO was launched using:
RESULT:
Template:
5BPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37627 for 400 contacts (-94.1/contact) +
2D Compatibility (PS) -7313 + (NN) -3240 + (LL) 468
1D Compatibility (HY) -9200 + (ID) 1250
Total energy: -58162.0 ( -145.41 by residue)
QMean score : 0.120
(partial model without unconserved sides chains):
PDB file :
Tito_5BPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BPS-query.scw
PDB file :
Tito_Scwrl_5BPS.pdb
: