Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVKKNRINEFITAKEVRLVDHNGEMVGVVSIGRALTFAQNVGLDLVEVAPDSIPPVCKILDYSKQKYDAKKKASEAKKKQKTLTIKEIKLGPNIGDHDYETKLRHARDFLTHGHKIKVTMKFKGRELINTEVGLEKLERLIRDTEDIAKIESAPKREGNQYFLALTTK
2RIF Chain:A ((102-132))
--------------RHVVVVNKNGELVGVLSI-RDLCFERAILLELATA------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12250 for 135 contacts (-90.7/contact) +
2D Compatibility (PS) -3347 + (NN) -679 + (LL) 9604
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -12622.0 ( -93.50 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_2RIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RIF-query.scw
PDB file :
Tito_Scwrl_2RIF.pdb
: