Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILISLLFILIFYSSANAFTLDDKLRDKNMEKRATNLFEMIKCPICSGESLSESGSQVAYNMRKMIREKISDGYTDEQITSE-LRNSYGDSIIIVPPVKFSTYILWLIPLVIPLIGCFLIRNIIK
4BQN Chain:A ((11-85))
-------------YGSCQAPALAKMLNSCPTFARDWELVEMEPCFVASEEQIDRHLAETIPKLDLFLYQPVSEGYRGEKYSSVFLRNSMPPGGNALSVQYMHWEGYHPTVNSPYGLPPHPEGYVDA
General information:
TITO was launched using:
RESULT:
Template:
4BQN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11250 for 463 contacts (-24.3/contact) +
2D Compatibility (PS) -7575 + (NN) 980 + (LL) 2028
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -20867.0 ( -45.07 by residue)
QMean score : 0.152
(partial model without unconserved sides chains):
PDB file :
Tito_4BQN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BQN-query.scw
PDB file :
Tito_Scwrl_4BQN.pdb
: