Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDENINFETDTTFALIKEAQRRKYKVFAYAPSNLALKLNQPIALAQKVSVDDCNFTSKEDVVINLNEMDIIFIRQDPPFDMRYITTTYILEKTRALVINNPTEMRNCPEKLITSLFP----ELIPPTLITENISMIRDFYHDYR-GIILKPLYSYGGNDVIRIQNENSIQVVVELMI---TKYKCPVIAQAFCKNVNKDKRILLLDGQPIGVMKRVPRVSGEIRTNLRLGASFEPVEMNDRDNEICNKIGPELKKRGLIFVGIDIVDD-----FLLEINITSPTGVVYINKLYNTSLEKDLWNTFEEKASSHISQPSL |
3VPB Chain:A ((12-281)) | ---------QEEKLIAKALEENKVQYDIINVAQEPLPF-----------------------NKALGRYDVAIIRPVSMY--RALYSSAVLEAAGVHTINSSDVINVCGDKILTYSKLYREGIPIPDSIIALSAEAALKAYEQRGFPLIDKPPIGSWGRLVSLIRDVFEGKTIIEHRELMGNSALKAHIVQEYIQYKGRDIRCIAIGEELLGCYARNIP-PNEWRANVALGGTPSNIEVDEKLKETVVKAVSIV---HGEFVSIDILEHPNKGYVVNELNDV-P-EFKGFMVATNINVAQKLVEYIKENYS-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VPB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146577 for 2043 contacts (-71.7/contact) +
2D Compatibility (PS) -26774 + (NN) 326 + (LL) 2836
1D Compatibility (HY) -6400 + (ID) 2600
Total energy: -179189.0 ( -87.71 by residue)
QMean score : 0.415
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