Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVENEGVLLVLSSPSGAGKTTILERLLERSTNLVRSVSMTTRKPRPGEINGKDYFFVTKKEFHELCEAGQMLEYARVFENFY--GIPKSFIEQNLSSGISVLLSIDWQGAFHLFELMREKVISVFILPPSMEELRLRLQKRNSDSASEIEHRLAEAQKEMSKRDKYDYVVINDDIDKSVEEISSILDKERLKRSGV
1S4Q Chain:A ((23-202))
------GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAV-TVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG--------
General information:
TITO was launched using:
RESULT:
Template:
1S4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87480 for 1273 contacts (-68.7/contact) +
2D Compatibility (PS) -19966 + (NN) -12799 + (LL) 1380
1D Compatibility (HY) -13200 + (ID) 3350
Total energy: -135415.0 ( -106.37 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1S4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S4Q-query.scw
PDB file :
Tito_Scwrl_1S4Q.pdb
: