Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGA---LTGLWLSFTALSHLI--IGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHKCHDWSWSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
4HQJ Chain:A ((292-353))
-----IITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENL
General information:
TITO was launched using:
RESULT:
Template:
4HQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23945 for 255 contacts (-93.9/contact) +
2D Compatibility (PS) -5673 + (NN) -553 + (LL) 296
1D Compatibility (HY) -8000 + (ID) 850
Total energy: -38725.0 ( -151.86 by residue)
QMean score : -0.009
(partial model without unconserved sides chains):
PDB file :
Tito_4HQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HQJ-query.scw
PDB file :
Tito_Scwrl_4HQJ.pdb
: