Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIHSDSPRQCLEEIIKSASAKFNESIDIAVNLGIDSRKSEEQVRGTVVLPKGIGKDIKVAVFTQGKHLLEAEKAGANIVGGEDLVQEIKKGKKLDVDWCITTPDFIAKI-TPIAKILGAKGLMPNPKFGTMTSNVAEAIKTIKSGQIKFRTDKNGIIHGKLGNIKFSVDDLLKNLKAFLKVIKSNKPISVKGVYFKSVFLNSTMGKAYKMSKVEDII
4REO Chain:A ((34-226))
------------------ATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGW-MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS---
General information:
TITO was launched using:
RESULT:
Template:
4REO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108139 for 1504 contacts (-71.9/contact) +
2D Compatibility (PS) -21205 + (NN) -14578 + (LL) 1632
1D Compatibility (HY) -15200 + (ID) 4000
Total energy: -161490.0 ( -107.37 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4REO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4REO-query.scw
PDB file :
Tito_Scwrl_4REO.pdb
: