Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVQVVEAFGKPHVNVGTIGHVDHGKTTLTAAIT----KHYGNFVAYDQIDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMPQTREHILLAKQVGVGYIVVYINKADVSDPDMIGLVEMEV-RELLSKYGFPGDEVPVVIGSALKALEDDDGEYGKKSIDKLMERLDDYVEVPPRSVDLPFLLPIEDVFSISGRGTVVTGRIEKGEIKIGDEIEIIGLKATQKTTCTGVEMFKKLLEKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLLEGKEMVMPGDNVSIEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE |
| 3VNV Chain:A ((294-677)) | ---------KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGG--------------------NTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGD-AEWEAK-ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202620 for 2868 contacts (-70.6/contact) +
2D Compatibility (PS) -39667 + (NN) -18136 + (LL) 2568
1D Compatibility (HY) -39200 + (ID) 12900
Total energy: -309955.0 ( -108.07 by residue)
QMean score : 0.567
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