Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLSVIGIKEPVSNKQLYEHCDIRII-FTKRDVIPVPRHWDPEDSITN-------GHTKQLYNKNWIPVSRTGMTG---------KGFEMTESNTGKLVHDRKLLFISSDIKSFFFAIRIE
4DC1 Chain:A ((82-161))
---------------------CDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKH
General information:
TITO was launched using:
RESULT:
Template:
4DC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5043 for 309 contacts (16.3/contact) +
2D Compatibility (PS) -6023 + (NN) 3379 + (LL) 1600
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -1101.0 ( -3.56 by residue)
QMean score : 0.060
(partial model without unconserved sides chains):
PDB file :
Tito_4DC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DC1-query.scw
PDB file :
Tito_Scwrl_4DC1.pdb
: