Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVDIVFRYKDDYNEFVKLLDLKKHSYICRSRQDEKGSDVLLKHMHDKKDRATIKMLMPNKCAVFVSKDRANKFIKNTLKIEVEVLSS
1Q8D Chain:A ((8-23))
------------------LQDSCKTNYICRSRLADFFTNCQPESRSVSNCLKENYADCLLAYSGLIGTVMTPNVAPWCDCSNSGNDLE
General information:
TITO was launched using:
RESULT:
Template:
1Q8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2992 for 67 contacts (44.7/contact) +
2D Compatibility (PS) -1648 + (NN) -961 + (LL) 1288
1D Compatibility (HY) -800 + (ID) 450
Total energy: 421.0 ( 6.28 by residue)
QMean score : -0.048
(partial model without unconserved sides chains):
PDB file :
Tito_1Q8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q8D-query.scw
PDB file :
Tito_Scwrl_1Q8D.pdb
: