Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYQYYNRIFNILLIIVLLLSNVTYADASESMHQIGSDIVVGLLKTEKETYPHELGLFQSIYEMFNS----FGVRTVFIDCNKIINLKKIQEELLSLLKQDEMLAKKLILDRIKIEIGQFIKGHKINRIFIPENYYNLHSEPFPPTPCCQLVTEAIVKIVDDNPTIHLLSICGGLQGIMSAKGIEVVHVENFVS-DEEQR-------RSHLKS--APNPQQEDVTFQQIKIVPNSHLAKVVAKFLLPDKNGWFSTCFPDAHSGTVNNRPENRRKLELLGYKIAAFSNDGVIEAIEDK-HG-NIYFQSHPEALVVKSDKNLHLSNHKARQVSTLVAMAIINDFLYRA |
| 3NVA Chain:A ((291-518)) | ----------------------------------KKTINIALVGKYTKLKD----SYISIKEAIYHASAYIGVRPKLIWIESTD-LE--S--------------------D-TKNLNEIL--GNVNGIIVLPGF-GSRG---------AEGKIKAIKYAREH-NIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKEGTIAYQLYGK---------KVVYERHRHRYEVN--PKYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVAS--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -87872 for 1650 contacts (-53.3/contact) +
2D Compatibility (PS) -22190 + (NN) -138 + (LL) 7176
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -111824.0 ( -67.77 by residue)
QMean score : 0.417
|
|
|