Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHASTGKGSKIKYSRVLFKISGEALMGSRPFGHDMELIDQLCKDISDIYKLGVQVCIVVGGGNIFRGASASLSGCERASSDYIGMLATIINALILQNFLEKNSVNSKVLSAIPMVTICEPYIRRKAIHHLEKGRVVIFAAGTGNPFFTTDTAAALRAVETNCDAILKGTQVNGVYSADPKKNEDAVMYDRLSYMDLLTRDLKVVDASAISLARENSIPIIVFSL-KEEKIVNIVKGHGTYTIVSDCE
2BNF Chain:A ((5-241))
--------AKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLN-VCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE--
General information:
TITO was launched using:
RESULT:
Template:
2BNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -225291 for 1996 contacts (-112.9/contact) +
2D Compatibility (PS) -26481 + (NN) -16201 + (LL) 352
1D Compatibility (HY) -22800 + (ID) 5150
Total energy: -295571.0 ( -148.08 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_2BNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BNF-query.scw
PDB file :
Tito_Scwrl_2BNF.pdb
: