Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATHLSFRQGVQECI---PTLLGYAGVGISFGIVASSQNFSILEIILLCLVIYA-----GAAQFIMCALFIAGTPISAIVLTVFIVNSRM----F-LLSMSLAPNFKTYGFWNRVGLGSLVTDETFGVAITPYLKGEAINDRWMHGLNITAYLFWAISCVAGALFGEYISNPQTLGLDFAITAMFIFLAIAQFESITKSRLRIYIVLIIAV-IVMMLSLSMFMPSYLAILIA-ATISAALGVMMER--
4G9Q Chain:A ((10-247))
QQPNVEGRRFSPDQVRSVAPALEQYTQQRLYGDVWQRPGLNRRDRSLVTIAALIARGEAPALTYYADQALENGVKPSEISETITHLAYYSGWGKAMATVGPVSEAFAKRGIGQDQLAAVESTPLPLDEEAEAQRATTVGNQFGSVAPGLVQYTTDY-------LFRDLWLRP---DLAPRDRSLVTIAALISVGQVEQITFHLNKALDNGLSEEQAAEVITHLAFYAGWPNAMSALPVAKAVFEKRRG
General information:
TITO was launched using:
RESULT:
Template:
4G9Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -229361 for 1628 contacts (-140.9/contact) +
2D Compatibility (PS) -22603 + (NN) -3066 + (LL) 888
1D Compatibility (HY) 19200 + (ID) 750
Total energy: -235692.0 ( -144.77 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_4G9Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G9Q-query.scw
PDB file :
Tito_Scwrl_4G9Q.pdb
: