Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELIGDKSTVQQAIHALQLIGFENVKSYRLPQTNIVTSSIHSSEMTGEEHNVLDVRNDDEWRKGHLKQAIHIPHGKLLNEDIPFDKNDLIYVHCQSGVRSSIAVGILEYKGFTNIVNVRGGYQHLPAFLK
3NTA Chain:A ((485-559))
-----------------------------------------------EDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRMHELPKDKEIIIFCQVGLRGNVAYRQLVNNGY-RARNLIGGYR-------
General information:
TITO was launched using:
RESULT:
Template:
3NTA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45352 for 531 contacts (-85.4/contact) +
2D Compatibility (PS) -8285 + (NN) -4738 + (LL) 4132
1D Compatibility (HY) -5200 + (ID) 1300
Total energy: -60743.0 ( -114.39 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_3NTA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NTA-query.scw
PDB file :
Tito_Scwrl_3NTA.pdb
: