Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDMLISLVIPVFALLVIGGIIWVIIEGIVHISKKNKAIDNFLNQVNKVSETYKFATAFLFLILATAGISQFYLYYIVSAFLFWLVILTFGIAGIIFLMPYGLCFLPLYKQKKKKQTFKKYMVYTTIGLSICLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQAGGYAYLALAVLSTLLIVAKKATNKNKEIETVDNTNITER
2LFC Chain:A ((22-58))
---------------------------------------------------------------------------------------------------------------------------------------AIYVNSKGDRIVNESNVYTTFRNAILKQADKVAYLVM-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23087 for 202 contacts (-114.3/contact) +
2D Compatibility (PS) -3832 + (NN) 1480 + (LL) 15696
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -13343.0 ( -66.05 by residue)
QMean score : -0.135
(partial model without unconserved sides chains):
PDB file :
Tito_2LFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LFC-query.scw
PDB file :
Tito_Scwrl_2LFC.pdb
: