Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNVEKSFIKIGLYFQIAYIVLMAITLCGFVICYGLIFGLFYLLSGSRADYLIVTIVISAIISIFVIILSIVPVIVLASDLFKERISKGVIL-IVLAIIALVLCNFVSAILWFVSAISILGRKKLVAAADTTTIQKSKGNANQASHKDTCKKELDSQDMMEHPEVKNPTTKNLEGFNEEIHKDEATTKVVSDNTEPPIESKGHVSKKD
3TDO Chain:A ((165-259))
---------------------------LCNILVCVSVLCS-FRTNSDTAKIIMIFLCLFAFITSGFE--HSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99381 for 567 contacts (-175.3/contact) +
2D Compatibility (PS) -9352 + (NN) -487 + (LL) 7804
1D Compatibility (HY) -9600 + (ID) 1200
Total energy: -112216.0 ( -197.91 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_3TDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDO-query.scw
PDB file :
Tito_Scwrl_3TDO.pdb
: