Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLATVGSLIVTSTLVFSSMPFQNAHADTTSMNVPNKQSQNVQNHRPYGGVVPQGMTQAQYTELEKTLPQLSAGSNMQDYNMKLYDATQNIADKYNVIITTNVGVFKPHAVRDMNGHALPLTKDGNFYQTNVDANGVNHGGSEMVQNKTGHMSQQDHMNQNTHMNQQPQIQQGHMQSSNHQMMSPKANMHSSNHQMNQSNKKVLPAAGESMTSSILTASIAALLLVSGLFLAFRRRSTNK |
| 2K1K Chain:A ((561-572)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLLGILVFRSRR---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2K1K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -2413 for 38 contacts (-63.5/contact) +
2D Compatibility (PS) -1145 + (NN) -25 + (LL) 12304
1D Compatibility (HY) -1600 + (ID) 200
Total energy: 6921.0 ( 182.13 by residue)
QMean score : -0.132
|
|
|