Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIFSQNLFRCPTPTCIVCRNWESNFSLLGPTPQLALPVEFLFEILCVGAPD
2REM Chain:A ((34-48))
-----------GYTCPHCAHFDSKLQ-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2REM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2200 for 57 contacts (-38.6/contact) +
2D Compatibility (PS) -1548 + (NN) -1643 + (LL) 2532
1D Compatibility (HY) -800 + (ID) 200
Total energy: -3859.0 ( -67.70 by residue)
QMean score : -0.185
(partial model without unconserved sides chains):
PDB file :
Tito_2REM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2REM-query.scw
PDB file :
Tito_Scwrl_2REM.pdb
: