Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGE----IFQHLAISLWRFVAGFVVALLVAIPLGFLLGRN-RWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIG-------------------------SLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGA-QS-------------GLGFLIVDARN----MLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE |
3RLF Chain:F ((259-503)) | -----------------------------------------TGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAI--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RLF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181081 for 1319 contacts (-137.3/contact) +
2D Compatibility (PS) -20146 + (NN) -4707 + (LL) 4944
1D Compatibility (HY) -10800 + (ID) 900
Total energy: -212690.0 ( -161.25 by residue)
QMean score : 0.179
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