Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKRQMGIFIYAGIIGGLLSGIVKLGWEVMFPPRTPERNATNPPQELLQQLGFSSEFTHQTYTFSNMELPWVSFIVHFSFSIVIAIIYCILVKKYAYLAIGQGAVFGIAIWVLFHLIIMPIMHTVPAVWDQPYQEHLSEFFGHIVWMMTIELVRQHFVYRYKLN
1Y6D Chain:A ((1-114))
MNTDVLNQQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSEQLLYLKEIS---------------------------------------HALKSSAASFG-----------ADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWTN
General information:
TITO was launched using:
RESULT:
Template:
1Y6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33360 for 871 contacts (-38.3/contact) +
2D Compatibility (PS) -11087 + (NN) 3451 + (LL) 5956
1D Compatibility (HY) 4800 + (ID) 800
Total energy: -31040.0 ( -35.64 by residue)
QMean score : -0.005
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6D-query.scw
PDB file :
Tito_Scwrl_1Y6D.pdb
: