Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFIVIKIGGSTL--SDMHPSIINNIKHLRSNNIYP-IIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLFEITSFDQQYGYVGV-----PTALNKDALQYLCTKFVPIINSIGFNNHDGEFYNINADTLAYFIASSLKAPIYVLSNIAGVLIND-VVIPQLPLVDIHQYIEHGDIYGGMIPKVLDAKNAIENGCPKVIIASGNKPNIIESIYNNDFVGTTILNS
1OHA Chain:A ((2-257))
MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINS----LLENGYLPVVSSIGVTD-EGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL--
General information:
TITO was launched using:
RESULT:
Template:
1OHA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -211033 for 2119 contacts (-99.6/contact) +
2D Compatibility (PS) -26620 + (NN) -8354 + (LL) 300
1D Compatibility (HY) -16800 + (ID) 3950
Total energy: -266457.0 ( -125.75 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1OHA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OHA-query.scw
PDB file :
Tito_Scwrl_1OHA.pdb
: