Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLHKKIAWTGIKGSAITTFITALYNGSSVWNALAVAGIAFGGGAGTAVAALGRATVMRFIKRWGVRKTAAW
2K9Y Chain:A ((536-550))
-----------------------------------AVIGGVAVGVVLLLV-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2K9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2184 for 53 contacts (-41.2/contact) +
2D Compatibility (PS) -1286 + (NN) 1257 + (LL) 5204
1D Compatibility (HY) 0 + (ID) 250
Total energy: 2741.0 ( 51.72 by residue)
QMean score : -0.466
(partial model without unconserved sides chains):
PDB file :
Tito_2K9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K9Y-query.scw
PDB file :
Tito_Scwrl_2K9Y.pdb
: