Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEWSQIFHDITTKHDFKAMHDFLEKEYSTAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPH--LQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
2BOO Chain:A ((40-238))
---------------FHELTDFLRQERKEYTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPLSE-QYFFGTRPFSKTNEALEKAGRGPVEW-----
General information:
TITO was launched using:
RESULT:
Template:
2BOO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113315 for 1559 contacts (-72.7/contact) +
2D Compatibility (PS) -21405 + (NN) -10349 + (LL) 1676
1D Compatibility (HY) -20000 + (ID) 5400
Total energy: -168793.0 ( -108.27 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_2BOO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BOO-query.scw
PDB file :
Tito_Scwrl_2BOO.pdb
: