Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGK-IVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRY--------EDLDGKKESKNDPELGKYWASL---GDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKA-QGKEIGISLLEEDKIDFAKDLL---EKHGDKIVLPVDTKVAKEFSNDAKITVVPSDS-IPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIG----VCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK |
| 2P9T Chain:A ((4-415)) | -AKLTLDKVDLKGKRVIMRVDFNVPMKNNQITNNQRIKAAIPSIKHCLDNGAKSVVLMSHLGRPDGIPMPDKYSLEPVADELKSLLNKDVIFLKDCVGPEVEQACANPDNGSIILLENLRFHVEEEGKGKDSSGKKISADPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLP-QKASGFLMKKELDYFSKALEKPERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGATIVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATIESGIPSGWMGLDCGPESIKINAQIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVKATSN--GCVTIIGGGDTATCCAKWGTEDKVSHVSTGGGASLELLEGKILPGVEALSN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2P9T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173455 for 3366 contacts (-51.5/contact) +
2D Compatibility (PS) -42686 + (NN) -16103 + (LL) 688
1D Compatibility (HY) -36000 + (ID) 9150
Total energy: -276706.0 ( -82.21 by residue)
QMean score : 0.559
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