Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYFVLAIFTIISASVSLGYSIQACASSHNINAYYALSRSLPLFLLAIFSLVIHSAIFLITISIAMILVQFLDAIVGYKSEDVFKTYGPLATSVVNLILLIVFLF
3VN5 Chain:A ((71-93))
-----------------------------------------------------------------------KKLPGCDESGKGDIFGSLVLCCV----------
General information:
TITO was launched using:
RESULT:
Template:
3VN5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3560 for 84 contacts (42.4/contact) +
2D Compatibility (PS) -2294 + (NN) 1183 + (LL) 9320
1D Compatibility (HY) -1200 + (ID) 200
Total energy: 10369.0 ( 123.44 by residue)
QMean score : -0.269
(partial model without unconserved sides chains):
PDB file :
Tito_3VN5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VN5-query.scw
PDB file :
Tito_Scwrl_3VN5.pdb
: