Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNYQQIFTTK-----YLKMFAYSILYAALITIITLAISYPAAYYIT----RSK--FQNILLMIMIIPTWINLLLKTYAFIGLLSHD-GVINQFFH-LFNL-PSFNLLFTTGA--FLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFYTFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTI---------------QNYGMGSTIA--IFLIVFMAFILIITKSSNGRG |
| 4KHZ Chain:F ((260-498)) | ---------------------------------------GWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILI----FKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLV---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KHZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186246 for 1363 contacts (-136.6/contact) +
2D Compatibility (PS) -20531 + (NN) 2425 + (LL) 5596
1D Compatibility (HY) -26000 + (ID) 2800
Total energy: -227556.0 ( -166.95 by residue)
QMean score : 0.213
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