Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSN-EHASYTEHPDHRFFATGDPTHITNIIKEWLNLS-VNVERISVND
2JFU Chain:A ((25-288))
-NRPIGFIDSGVGGLTVVKEALKQLPNENILFVGDTARCPYGPRPAEQVIQYTWEMTDYLVEQGIKMLVIACNTATAVALEEIKAALSIPVIGVILPGTRAAVKKTQNKQVGIIGTIGTVKSQAYEKALKEKVPELTVTSLACPKFVSVVESNEYHS-SVAKKIVAETLAPLTTKKIDTLILGCTHYPLLRPIIQNVMGENVQLIDSGAETVGEVSMLLDYFNLSNSPQNGRTLCQFYTTGSAKLFEEIAEDWLGIGHLNVEHIEL--
General information:
TITO was launched using:
RESULT:
Template:
2JFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -235303 for 2322 contacts (-101.3/contact) +
2D Compatibility (PS) -28118 + (NN) -7810 + (LL) -88
1D Compatibility (HY) -27600 + (ID) 6500
Total energy: -305419.0 ( -131.53 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_2JFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFU-query.scw
PDB file :
Tito_Scwrl_2JFU.pdb
: