Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQQKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
1VME Chain:B ((118-160))
--------------------------------EIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFK------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VME.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1675 for 188 contacts (8.9/contact) +
2D Compatibility (PS) -3748 + (NN) 2791 + (LL) 4732
1D Compatibility (HY) -1600 + (ID) 800
Total energy: 3050.0 ( 16.22 by residue)
QMean score : 0.034
(partial model without unconserved sides chains):
PDB file :
Tito_1VME.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VME-query.scw
PDB file :
Tito_Scwrl_1VME.pdb
: