Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEIETIISEIEKLL--TNNTPYSISKNSGVPRQTVTDLKVGKTKIKEAKFKTIIKLYEYQRTLENKTEC
3BDN Chain:A ((15-75))
---ARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGI---NALNAYNAALLAKILKVSV-----
General information:
TITO was launched using:
RESULT:
Template:
3BDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2910 for 337 contacts (-8.6/contact) +
2D Compatibility (PS) -5873 + (NN) 117 + (LL) 748
1D Compatibility (HY) 1200 + (ID) 400
Total energy: -7118.0 ( -21.12 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_3BDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BDN-query.scw
PDB file :
Tito_Scwrl_3BDN.pdb
: