Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
2F0V Chain:A ((9-141))
---------------------------------------------KEPATLIKAIDGDTLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMLENAKKLEVEFDKGQRTDKYGRGLAYIY-ADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
2F0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11809 for 1013 contacts (11.7/contact) +
2D Compatibility (PS) -14165 + (NN) -7559 + (LL) 3588
1D Compatibility (HY) -9200 + (ID) 2600
Total energy: -18127.0 ( -17.89 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_2F0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F0V-query.scw
PDB file :
Tito_Scwrl_2F0V.pdb
: