Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTILAEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPTVNDLPERDLSQQISDYEKYGANAVSILTDEKYFGGSFERLQALTTKTTLPVLCKDFIIDPLQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEVLIEVHDRHELERAYKVNAKLIGVNNRDLKRFVTNVEHTNTILENKKPNHHYISESGIHDASDVRKILHSGIDGLLIGEALMRCDNLSEFLPQLKMQKVKS
1JCM Chain:P ((3-245))
-CVLAKIVADKAIWVEARKQQQPLASFQNEVQPSTRHFYDALQGA-RTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLCDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFA-NGFLIGSALMAHDDL--------------
General information:
TITO was launched using:
RESULT:
Template:
1JCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115369 for 2069 contacts (-55.8/contact) +
2D Compatibility (PS) -26007 + (NN) -7251 + (LL) 1496
1D Compatibility (HY) -19600 + (ID) 4450
Total energy: -171181.0 ( -82.74 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1JCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JCM-query.scw
PDB file :
Tito_Scwrl_1JCM.pdb
: