Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLTIFQHPLTS-----FNPDWTIETSLKEALYYYR-GLTDNTAQDQLLLQHLSTF-----ELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNV----INILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQTFSY
3QF4 Chain:B ((355-569))
-IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKT------SIIIAHRLNTIKN-ADLIIVLRDGEIVE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3QF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124783 for 1420 contacts (-87.9/contact) +
2D Compatibility (PS) -21388 + (NN) -2731 + (LL) 2708
1D Compatibility (HY) -15200 + (ID) 3500
Total energy: -164894.0 ( -116.12 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_3QF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QF4-query.scw
PDB file :
Tito_Scwrl_3QF4.pdb
: