Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEHKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERDSQKGIVIGKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDWRNKVNFIRQIGYVEDQD
4DCU Chain:A ((26-206))
--------VAIVGRPNVGKSTIFNRIAGERIS-----------RIYSSAEWLNYDFNLIDTGG------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKL------------YDFYS-LGFGEPYPISGTHGLGLGDLLDAVAEHF----KNIPETKYNEEVIQFCL------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DCU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116061 for 1099 contacts (-105.6/contact) +
2D Compatibility (PS) -15821 + (NN) -4270 + (LL) 10572
1D Compatibility (HY) -11200 + (ID) 2550
Total energy: -139330.0 ( -126.78 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_4DCU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DCU-query.scw
PDB file :
Tito_Scwrl_4DCU.pdb
: