Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVIGLTGGIASGKSTVSELLSVFGFKVVDADKAAREAVKKGSKGLAQVREVFGDEAIDENGEMNRRYMGDLVFNHPEKRLELNAIIHPIVRDIMEEEKQEYLKQGYNVIMDIPLLFENE-LENTVDEVWVVYTSESIQMDRLMQRNNLSLEDAKARVYSQISIDKKSRMADHVIDNLGDKLELKQNLERLLEEEGYIEKPNYGEED
4I1U Chain:A ((12-183))
----IGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRRLEAITHPLIR--AETEREARDAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIARQATREARLAAADDVIVN------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4I1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31255 for 1265 contacts (-24.7/contact) +
2D Compatibility (PS) -18818 + (NN) -5593 + (LL) 2172
1D Compatibility (HY) -8800 + (ID) 3000
Total energy: -65294.0 ( -51.62 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_4I1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I1U-query.scw
PDB file :
Tito_Scwrl_4I1U.pdb
: