Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDNSTKYLLYIQTATSNHLETNCVFLHCDYILKVPINKLVSYYAKLHLSSQSVLIETAKNILNINKLVPIYINPKTILFPLKHKRAPIQIYINAHYIVGMTAIENSTLIHFQ-------EG--IQLEVDEPFSLVSKKCHESLALKHFIENTISN
2E1B Chain:A ((30-107))
-----------------------------------------------------------------------ILLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDEEGNVWHVVKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEH-------
General information:
TITO was launched using:
RESULT:
Template:
2E1B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40583 for 396 contacts (-102.5/contact) +
2D Compatibility (PS) -7270 + (NN) -313 + (LL) 6228
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -47388.0 ( -119.67 by residue)
QMean score : 0.208
(partial model without unconserved sides chains):
PDB file :
Tito_2E1B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E1B-query.scw
PDB file :
Tito_Scwrl_2E1B.pdb
: