Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRTLVLLITAIFILAACGNHKDDQAGKDNQKHNNSSNQVKEIATDKNVQGDNYRTLLPFKESQARGLLQDNMANSYNGGDFEDGLLNLSKEVFPTDKYLYQDGQFLDKKTINAYLNPKYTKREIDKMSEKDKKDKKANENLGLNPSHEGETNPEKIAEKSPAYLSNILEQDFYGGGDTKGKNIKGMTIGLAMNSVYYYKKEKDGPTFSKKLDDSEVKKQGKQMASEILSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNEWHNINEKSALLPSSTAADYDENLNNNFKQFNDNLQSYFS-NFTQAVGKVKFVDKKPQRLVVDLPIDYYGQAETIGITQYVTEQANKYFDKIDNYEIRIKDGNQPRALISKTKDDKEPQVHIYSN |
3N2Q Chain:A ((56-340)) | ---------------------------------------------------------APLKEQKVINTANIKTNSKLDLAEYENGLINIATQQFDTESHVLQLNQYIPEKLIDELVAKVE----------------------------------------AP-VLTNIIEQDYFGK---NELSLSGVMIGLAMSS---------------SVSNEEAMSKGTEVAKQLIEAINKNDKYNKSPITFAIFKQESTSSLKNGTYIASATVQKNDTNLGNWSTIDEKSYSYPSDEFTQAHGEDNTKINNFAKEIKGF-NGDFIPVNAKVSYKKDQMDTLNMNIVIKYNGKTELMALTQLAAQGMLDKLPKDAKVQLQIKSESKIEAVIIKEKNSDKPFVSFL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N2Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 73771 for 2020 contacts (36.5/contact) +
2D Compatibility (PS) -27706 + (NN) 1167 + (LL) 5652
1D Compatibility (HY) 4800 + (ID) 1900
Total energy: 55784.0 ( 27.62 by residue)
QMean score : 0.135
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