Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFFFIGLLVFVVFFTAATIIWFSYDKNKYGTKQYDKTFKDDAFDNVSINLDSTELRIKRGNQFRVKYDGDNDILINIVDKTLKISDKRSKTRGYAIDMNPFHENKKTLTIEMPDKMIKRLNLS-SGAGSVRISDV-DLENTSIQ-SINGEVVIKNSNLDALDSK-TNNSSTYISKSNIKNSNIK-VVIGTLQIDKSQIKQSIFL-NDHGDIEFKNMPSKVDAKAS-TKQGDIRFKYDSKPEDTILKLNPGTGDSVVKNKTFTNGKVGKSDNVLEFYTIDGNIKVE |
| 3LYC Chain:A ((132-249)) | ----------------------------------------------------------------------------------------------------------------------AEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVLGGT-VGIAEFSIAGSGTVRAFDCTMDELECKIAGSGDIEAFVVN---KIKAEIAGSGSVKYKGDP----------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 48655 for 843 contacts (57.7/contact) +
2D Compatibility (PS) -10720 + (NN) 4527 + (LL) 9108
1D Compatibility (HY) 2000 + (ID) 600
Total energy: 52970.0 ( 62.84 by residue)
QMean score : 0.168
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