Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTLVNMFFDFIIKLAKAIGIVGGVNACSSLFDEPKVPAELTNLYDK
1V54 Chain:D ((105-116))
----------------------------------GPIPHTFEEEWV-
General information:
TITO was launched using:
RESULT:
Template:
1V54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 379 for 38 contacts (10.0/contact) +
2D Compatibility (PS) -1239 + (NN) -864 + (LL) 2736
1D Compatibility (HY) -800 + (ID) 50
Total energy: 162.0 ( 4.26 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_1V54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V54-query.scw
PDB file :
Tito_Scwrl_1V54.pdb
: