Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDKYYRSAYMNVDLNAVASNFK-VFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTGMGRLGIK-DTNTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTT----EQYQRFKDMVNEA-IKPEYIHCQNSAGSLLMDCQ--FCNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSFVNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCNLSRRLPRIYHDGDQRFVTNELLK |
4LUT Chain:A ((9-383)) | ---------WAEINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVARTAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQK-INEIAKSLGEKACVHVKID-------FQPNEESVQEIIEL-NKLEYIDLEGMFTHFATADEVSKEYTYKQANNYKFMSDKLDEAGVKIAIKHVSNSAA--IMDCPDLRLNMVRAGIILYGHYPSDDVF-KDRLELRPAMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTRIQKNPKVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFG---EGEVTAERIAKDLGTINYEVLCMISRRVDRVYMENNELVQINSYL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LUT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -253612 for 2938 contacts (-86.3/contact) +
2D Compatibility (PS) -38083 + (NN) -7161 + (LL) 1332
1D Compatibility (HY) -31200 + (ID) 6850
Total energy: -335574.0 ( -114.22 by residue)
QMean score : 0.523
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