Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHNLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL
1W4R Chain:A ((20-191))
-------GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACLLRDVAQEAL-GVAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEV------IGGADKYHSVCRLCYF-----------
General information:
TITO was launched using:
RESULT:
Template:
1W4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78655 for 1414 contacts (-55.6/contact) +
2D Compatibility (PS) -18340 + (NN) -8197 + (LL) 1456
1D Compatibility (HY) -17200 + (ID) 3500
Total energy: -124436.0 ( -88.00 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_1W4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W4R-query.scw
PDB file :
Tito_Scwrl_1W4R.pdb
: