Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLL-FVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVIDRT----LKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAA--GLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
4BUZ Chain:A ((9-242))
----------LLNESRLTVTLTGAGISTPSGIPDF---------YSQN------VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE
General information:
TITO was launched using:
RESULT:
Template:
4BUZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112627 for 1816 contacts (-62.0/contact) +
2D Compatibility (PS) -22851 + (NN) -2845 + (LL) 1072
1D Compatibility (HY) -22400 + (ID) 4600
Total energy: -164251.0 ( -90.45 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_4BUZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BUZ-query.scw
PDB file :
Tito_Scwrl_4BUZ.pdb
: